What Accounting Software Integrates With Shopify?

What Accounting Software Integrates With Shopify? | Accounting Smarts
Charles Hall

Last updated by

Charles Hall


June 10, 2022

Shopify is one of the most popular e-commerce platforms and finding the right accounting software integration is vital to the success of a small business.

Shopify is one of the most popular e-commerce platforms and finding the right accounting software integration is vital to the success of a small business.

Shopify is a widely used platform with an app store to support its users, there are a lot of options to consider for accounting. The three best accounting software integrations are QuickBooks, Xero, and FreshBooks. However, if you value automation then Zoho Books is an excellent choice too.

Shopify has become an ecommerce powerhouse but without a solid accounting software integration, it is impossible to fill the gaps in business functions. This is why these accounting software tools are so important for Shopify store owners. Each of these platforms is cloud-based too so you can properly handle your business finances from anywhere.

Our experts understand better than anyone how to integrate different software solutions together to create automation within a business. It becomes even more vital in small businesses because you have a smaller team to handle tasks. This guide explains everything you need to know about accounting software integrations with Shopify.  

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Table of contents

What Accounting Software Integrates With Shopify?

Shopify is a software that lets you create your own ecommerce website. If you are an individual or small business owner, it is the perfect solution for you.

The integration of accounting software with Shopify is important because it allows individuals and small businesses to take advantage of the other features that the other service offers.

The accounting software is a must-have for every startup. It puts everything in place and keeps everything under control. There are some accounting software integrations with Shopify that can help your business in many ways.

Shopify has developed a platform that works with many of the top accounting software platforms on the market. These options include QuickBooks, Xero, FreshBooks, Zoho Books, and Sage Business Cloud Accounting. Each of these platforms allows for proper accounting management, inventory tracking, and payroll integrations too.


Shopify has a lot of features that make life easier for business owners. One of these features is integration with QuickBooks accounting software. QuickBooks allows you to keep your accounting data in a single location and Shopify can seamlessly import all the transactions from the accounting program.

Quickbooks allows you to manage your business while keeping track of your income and expenses for tax purposes. It also has built-in analytics and reporting tools that provide insights into how well your business is performing based on key metrics.

QuickBooks is an efficient way of keeping your business accounts in order while creating a seamless integration between business and e-commerce. From managing cash flow to automatically tracking expenses, everything can be done in one place to run your company more effectively.

There are many important features like tracking expenses, inventory, payroll, and invoicing for both small and medium enterprises. The product also has a mobile app that allows users worldwide access anytime and anywhere.

Not only do you get the most features with QuickBooks, but it can all be had for low pricing starting as low as $12.50 per month for small businesses.


Xero is a cloud-based accounting software. It is made up of several features and functionalities that make it easy for small and medium-sized businesses to manage their finances. One important feature that sets Xero apart from other software is its automated recurring billing.

This feature allows you to set up recurring payments for your services, products, subscriptions, and more without having to manually enter the transactions each time you get billed.

Xero has many features like Payroll, Inventory Management, Time Tracking and Invoicing that make it stand out from other accounting software packages available in the market today.

The Xero integration is one of the most recent integrations for Shopify. It allows users to connect their transaction data, inventory, or business activities to make their business more efficient.

This integration can also be used as a way for users who are starting up their own stores without any knowledge of accounting software, or for retailers who want to sell online but don't have an inventory system.

This accounting tool will help you work smarter and grow your business faster than ever before by removing any guesswork from your financial process so you can focus on the things that matter most - your customers and growing your business.


Freshbooks is one of the most popular accounting platforms that e-commerce owners use for their online businesses. It also provides you with solutions for managing inventory, shipping, and finances for your Shopify store.

The integration with Shopify helps improve order accuracy by pulling sales data from Freshbooks so that you can keep track of what's selling well and what's not selling as well within your organization.

This accounting software allows Shopify merchants to automate their bookkeeping process by syncing their transactions with FreshBooks. This will allow for more time for sales representatives to focus on sales instead of tracking things manually.

FreshBooks has a lot of features that make it user-friendly and convenient to use. They enable users to create invoices in less than 10 minutes, track their time spent on projects, or send professional-looking proposals in minutes.

This platform has a lot of features that can be helpful for small business owners, freelancers, and accountants alike. From integrated invoicing to tax time management tools, FreshBooks is a great option for anyone who is looking for easy-to-use accounting software with powerful features.

Zoho Books

Zoho Books is a cloud-based accounting software, which provides a number of features to its users. One such feature is the review of past transactions in the system, which helps in planning for the future. This tool is designed for those businesses starting from the ground up and makes for a great platform to scale with.

This is a cloud-based accounting software that helps small business owners manage their finances. The interface is user-friendly and easy to navigate while it also offers a comprehensive set of features for managing payroll, taxes, accounts payable and receivables, sales reports, and inventory.

Zoho Books review allows you to stay on top of your finances by providing insights about the financial performance of your business. It offers various features including instant updates to give you a clear view of where your company stands, charts, and more information about the business’s revenue and expenses.

Zoho Books integrates with Shopify to help business owners get their books in order through Shopify’s dashboard. It provides a web-based interface for Zoho Books users to upload their transactions into Shopify’s dashboard seamlessly.

Beyond just the basic accounting needs, you can set up Zoho to work in a way Zapier works with Shopify. For example, you can create a trigger event and an action that occurs when triggered.

An example of this would be a trigger of a new order being created. The action that gets triggered is for Zoho Books to create a new customer account within your bookkeeping. This saves you a ton of time rather than inputting this data on your own.

Sage Business Cloud Accounting

This would be our lowest-rated accounting software integration with Shopify. The application within the Shopify store is still not fully updated and at the same levels as some of the other accounting integrations that are available.

However, the Sage Business Cloud Accounting integration still provides a seamless interface with Shopkeeper to streamline the bookkeeping process. It includes easy access to past financial data and enables users to pay bills and automate recurring tasks.

With this integration, Shopify sellers can view their invoices and store credit card information in Sage Business Cloud Accounting, which helps reduce errors and speed up payment processes.

Sage is easy to use, both for new and experienced users. It is very simple and easy for beginners with an intuitive interface. You can easily track your spending, create invoices, and view financial statements on the dashboard with just a couple of clicks.

This software has many features that enhance the work process of business owners. These include payroll integration, time tracking, invoicing and receipts, expenses management tools, and a full-blown ERP system.